Note: this list is generated by looking for the string for this theme hook, so it may include some references that are not actually using this theme hook.

blog_node_view in modules/blog/blog.module
Implements hook_node_view().
book_node_view_link in modules/book/book.module
Adds relevant book links to the node's links.
comment_build_content in modules/comment/comment.module
Builds a structured array representing the comment's content.
comment_node_view in modules/comment/comment.module
Implements hook_node_view().
drupal_common_theme in includes/common.inc
Provides theme registration for themes across .inc files.
garland_preprocess_page in themes/garland/template.php
Override or insert variables into the page template.
locale_block_view in modules/locale/locale.module
Implements hook_block_view().
node_admin_nodes in modules/node/node.admin.inc
Form builder: Builds the node administration overview.
node_build_content in modules/node/node.module
Builds a structured array representing the node's content.
page.tpl.php in modules/system/page.tpl.php
Default theme implementation to display a single Drupal page.
page.tpl.php in themes/bartik/templates/page.tpl.php
Bartik's theme implementation to display a single Drupal page.
page.tpl.php in modules/block/tests/themes/block_test_theme/page.tpl.php
Custom theme implementation to display a single Drupal page without sidebars. The sidebars are hidden by regions_hidden for this theme, so the default page.tpl.php will not work without throwing exceptions.
path_admin_overview in modules/path/path.admin.inc
Returns a listing of all defined URL aliases.
statistics_node_view in modules/statistics/statistics.module
Implements hook_node_view().
system_modules in modules/system/system.admin.inc
Menu callback; provides module enable/disable interface.
theme_system_modules_fieldset in modules/system/system.admin.inc
Returns HTML for the modules form.
theme_system_themes_page in modules/system/system.admin.inc
Returns HTML for the Appearance page.
translation_node_view in modules/translation/translation.module
Implements hook_node_view().
update_script_selection_form in ./update.php
Form constructor for the list of available database module updates.
user_login_block in modules/user/user.module
_system_modules_build_row in modules/system/system.admin.inc
Build a table row for the system modules page.